%%% -*-BibTeX-*- %%% Do NOT edit. File created by BibTeX with style %%% ACM-Reference-Format-Journals [18-Jan-2012]. \begin{thebibliography}{00} %%% ==================================================================== %%% NOTE TO THE USER: you can override these defaults by providing %%% customized versions of any of these macros before the \bibliography %%% command. Each of them MUST provide its own final punctuation, %%% except for \shownote{}, \showDOI{}, and \showURL{}. The latter two %%% do not use final punctuation, in order to avoid confusing it with %%% the Web address. %%% %%% To suppress output of a particular field, define its macro to expand %%% to an empty string, or better, \unskip, like this: %%% %%% \newcommand{\showDOI}[1]{\unskip} % LaTeX syntax %%% %%% \def \showDOI #1{\unskip} % plain TeX syntax %%% %%% ==================================================================== \ifx \showCODEN \undefined \def \showCODEN #1{\unskip} \fi \ifx \showDOI \undefined \def \showDOI #1{#1}\fi \ifx \showISBNx \undefined \def \showISBNx #1{\unskip} \fi \ifx \showISBNxiii \undefined \def \showISBNxiii #1{\unskip} \fi \ifx \showISSN \undefined \def \showISSN #1{\unskip} \fi \ifx \showLCCN \undefined \def \showLCCN #1{\unskip} \fi \ifx \shownote \undefined \def \shownote #1{#1} \fi \ifx \showarticletitle \undefined \def \showarticletitle #1{#1} \fi \ifx \showURL \undefined \def \showURL {\relax} \fi % The following commands are used for tagged output and should be % invisible to TeX \providecommand\bibfield[2]{#2} \providecommand\bibinfo[2]{#2} \providecommand\natexlab[1]{#1} \providecommand\showeprint[2][]{arXiv:#2} \bibitem[\protect\citeauthoryear{Aschwanden}{Aschwanden}{2016}]% {aschwanden} \bibfield{author}{\bibinfo{person}{Christie Aschwanden}.} \bibinfo{year}{2016}\natexlab{}. \newblock \bibinfo{title}{You Can’t Trust What You Read About Nutrition}. \newblock \bibinfo{howpublished}{http://fivethirtyeight.com/features/you-cant-trust-what-you-read-about-nutrition/}. (\bibinfo{year}{2016}). \newblock \bibitem[\protect\citeauthoryear{Baggerly}{Baggerly}{2011}]% {Baggerly-2011-1} \bibfield{author}{\bibinfo{person}{Keith~A Baggerly}.} \bibinfo{year}{2011}\natexlab{}. \newblock \showarticletitle{The Importance of Reproducible Research in Genomics}. \newblock \bibitem[\protect\citeauthoryear{Baker}{Baker}{2016}]% {baker} \bibfield{author}{\bibinfo{person}{Monya Baker}.} \bibinfo{year}{2016}\natexlab{}. \newblock \showarticletitle{{1,500 scientists lift the lid on reproducibility}}. \newblock \bibinfo{journal}{{\em Nature\/}} \bibinfo{volume}{533}, \bibinfo{number}{7604} (\bibinfo{date}{25 May} \bibinfo{year}{2016}), \bibinfo{pages}{452--454}. \newblock \showISSN{0028-0836} \showDOI{% \url{https://doi.org/10.1038/533452a}} \bibitem[\protect\citeauthoryear{Berk, Brown, Buja, Zhang, and Zhao}{Berk et~al\mbox{.}}{2013}]% {berk2013} \bibfield{author}{\bibinfo{person}{Richard Berk}, \bibinfo{person}{Lawrence Brown}, \bibinfo{person}{Andreas Buja}, \bibinfo{person}{Kai Zhang}, {and} \bibinfo{person}{Linda Zhao}.} \bibinfo{year}{2013}\natexlab{}. \newblock \showarticletitle{Valid post-selection inference}. \newblock \bibinfo{journal}{{\em Ann. Statist.\/}} \bibinfo{volume}{41}, \bibinfo{number}{2} (\bibinfo{date}{04} \bibinfo{year}{2013}), \bibinfo{pages}{802--837}. \newblock \showDOI{% \url{https://doi.org/10.1214/12-AOS1077}} \bibitem[\protect\citeauthoryear{Christensen}{Christensen}{2013}]% {christensen} \bibfield{author}{\bibinfo{person}{R. Christensen}.} \bibinfo{year}{2013}\natexlab{}. \newblock \bibinfo{booktitle}{{\em Log-Linear Models}}. \newblock \bibinfo{publisher}{Springer New York}. \newblock \showISBNx{9781475741117} \showLCCN{90042812} \showURL{% \url{https://books.google.com/books?id=AIzgBwAAQBAJ}} \bibitem[\protect\citeauthoryear{Donoho, Maleki, Shahram, Rahman, and Stodden}{Donoho et~al\mbox{.}}{2009}]% {Donoho-2009-8-18} \bibfield{author}{\bibinfo{person}{David~L. Donoho}, \bibinfo{person}{Arian Maleki}, \bibinfo{person}{Morteza Shahram}, \bibinfo{person}{Inam~Ur Rahman}, {and} \bibinfo{person}{Victoria Stodden}.} \bibinfo{year}{2009}\natexlab{}. \newblock \showarticletitle{Reproducible research in computational harmonic analysis}. \newblock \bibinfo{journal}{{\em Computing in Science and Engineering\/}} \bibinfo{volume}{11}, \bibinfo{number}{1} (\bibinfo{year}{2009}), \bibinfo{pages}{8--18}. \newblock \showISBNx{1521-9615} \showISSN{15219615} \showDOI{% \url{https://doi.org/10.1109/MCSE.2009.15}} \bibitem[\protect\citeauthoryear{Gandrud}{Gandrud}{2016}]% {gandrud} \bibfield{author}{\bibinfo{person}{C. Gandrud}.} \bibinfo{year}{2016}\natexlab{}. \newblock \bibinfo{booktitle}{{\em Reproducible Research with R and R Studio, Second Edition}}. \newblock \bibinfo{publisher}{CRC Press}. \newblock \showISBNx{9781498715386} \showURL{% \url{https://books.google.com/books?id=Ce35CQAAQBAJ}} \bibitem[\protect\citeauthoryear{Harper and Konstan}{Harper and Konstan}{2015}]% {ml} \bibfield{author}{\bibinfo{person}{F.~Maxwell Harper} {and} \bibinfo{person}{Joseph~A. Konstan}.} \bibinfo{year}{2015}\natexlab{}. \newblock \showarticletitle{The MovieLens Datasets: History and Context}. \newblock \bibinfo{journal}{{\em ACM Trans. Interact. Intell. Syst.\/}} \bibinfo{volume}{5}, \bibinfo{number}{4}, Article \bibinfo{articleno}{19} (\bibinfo{date}{Dec.} \bibinfo{year}{2015}), \bibinfo{numpages}{19}~pages. \newblock \showISSN{2160-6455} \showDOI{% \url{https://doi.org/10.1145/2827872}} \bibitem[\protect\citeauthoryear{Hayden}{Hayden}{2012}]% {hayden} \bibfield{author}{\bibinfo{person}{EC Hayden}.} \bibinfo{year}{2012}\natexlab{}. \newblock \showarticletitle{Lapses in oversight compromise omics results: US board calls for tighter control of test-based data}. \newblock \bibinfo{journal}{{\em Nature\/}} (\bibinfo{year}{2012}). \newblock \showDOI{% \url{https://doi.org/10.1038/nature.2012.10298}} \bibitem[\protect\citeauthoryear{Hsu}{Hsu}{1996}]% {hsu} \bibfield{author}{\bibinfo{person}{J. 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Foster}.} \bibinfo{year}{2016}\natexlab{}. \newblock \showarticletitle{Applications of the {FACE}-{IT} Data Science Portal and Workflow Engine for Operational Food Quality Prediction and Assessment: Mussel Farm Monitoring in the Bay of Napoli, Italy}. In \bibinfo{booktitle}{{\em WORKS@SC}} {\em (\bibinfo{series}{CEUR Workshop Proceedings})}, \bibfield{editor}{\bibinfo{person}{Sandra Gesing} {and} \bibinfo{person}{Rizos Sakellariou}} (Eds.). \bibinfo{pages}{64--68}. \newblock \showURL{% \url{http://ceur-ws.org/Vol-1800}} \bibitem[\protect\citeauthoryear{{National Institutes of Health}}{{National Institutes of Health}}{[n. d.]}]% {nih} \bibfield{author}{\bibinfo{person}{{National Institutes of Health}}.} \bibinfo{year}{[n. d.]}\natexlab{}. \newblock \bibinfo{title}{Rigor and Reproducibility}. \newblock \bibinfo{howpublished}{https://grants.nih.gov/reproducibility/index.htm}. (\bibinfo{year}{[n. d.]}). \newblock \bibitem[\protect\citeauthoryear{Peng}{Peng}{2011}]% {Peng-2011-1226-1227} \bibfield{author}{\bibinfo{person}{Roger~D Peng}.} \bibinfo{year}{2011}\natexlab{}. \newblock \showarticletitle{Reproducible research in computational science.} \newblock \bibinfo{journal}{{\em Science (New York, N.Y.)\/}} \bibinfo{volume}{334}, \bibinfo{number}{6060} (\bibinfo{date}{dec} \bibinfo{year}{2011}), \bibinfo{pages}{1226--1227}. \newblock \showISSN{1095-9203} \showDOI{% \url{https://doi.org/10.1126/science.1213847}} \bibitem[\protect\citeauthoryear{Pollin}{Pollin}{2014}]% {pollin} \bibfield{author}{\bibinfo{person}{Robert Pollin}.} \bibinfo{year}{2014}\natexlab{}. \newblock \bibinfo{title}{Response to Charges Concerning the Herndon/Ash/Pollin Replication of Reinhart and Rogoff's ``Growth in a Time of Debt''}. \newblock \bibinfo{howpublished}{https://pdfs.semanticscholar.org/1502/36d0458282926ba3febc46f0a0f3a5e0e524.pdf}. (\bibinfo{year}{2014}). \newblock \bibitem[\protect\citeauthoryear{Ram}{Ram}{2013}]% {karthik} \bibfield{author}{\bibinfo{person}{Karthik Ram}.} \bibinfo{year}{2013}\natexlab{}. \newblock \showarticletitle{Git can facilitate greater reproducibility and increased transparency in science}. \newblock \bibinfo{journal}{{\em Source code for biology and medicine\/}} \bibinfo{volume}{8}, \bibinfo{number}{1} (\bibinfo{year}{2013}), \bibinfo{pages}{7}. \newblock \bibitem[\protect\citeauthoryear{Reich}{Reich}{2011}]% {Reich-Nature-2011} \bibfield{author}{\bibinfo{person}{Eugenie~Samuel Reich}.} \bibinfo{year}{2011}\natexlab{}. \newblock \showarticletitle{Cancer trials errors revealed}. \newblock \bibinfo{journal}{{\em Nature\/}} \bibinfo{volume}{469}, \bibinfo{number}{January} (\bibinfo{date}{jan} \bibinfo{year}{2011}), \bibinfo{pages}{139--140}. \newblock \showISSN{0028-0836} \showDOI{% \url{https://doi.org/10.1038/469139a}} \bibitem[\protect\citeauthoryear{{RStudio Team}}{{RStudio Team}}{2015}]% {rstudio} \bibfield{author}{\bibinfo{person}{{RStudio Team}}.} \bibinfo{year}{2015}\natexlab{}. \newblock \bibinfo{booktitle}{{\em RStudio: Integrated Development Environment for R}}. \newblock RStudio, Inc., Boston, MA. \newblock \showURL{% \url{http://www.rstudio.com/}} \bibitem[\protect\citeauthoryear{Siegfried}{Siegfried}{2015}]% {siegfried} \bibfield{author}{\bibinfo{person}{Tom Siegfried}.} \bibinfo{year}{2015}\natexlab{}. \newblock \showarticletitle{{P value ban: small step for a journal, giant leap for science}}. \newblock \bibinfo{journal}{{\em Science News\/}} (\bibinfo{year}{2015}). \newblock \bibitem[\protect\citeauthoryear{Sigillito}{Sigillito}{1990}]% {pima} \bibfield{author}{\bibinfo{person}{Vincent Sigillito}.} \bibinfo{year}{1990}\natexlab{}. \newblock \bibinfo{title}{Pima Indians Diabetes Data Set}. \newblock \bibinfo{howpublished}{https://archive.ics.uci.edu/ml/datasets/pima+indians+diabetes}. 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