\documentclass[11pt]{book}

\include{Includes/Includes}

\begin{document} 

\thispagestyle{empty}
\input Cover 
\newpage
\pagecolor{white}
\color{black}

\input ../../MiscPLN/AuthorBio 

\frontmatter
\tableofcontents
\include{Preface}

\mainmatter
\input Intro
\input ProbCalc
\input DiscreteProb
\input ContinProb
\input Hazard
\input StopAndReview
\input RandVecs
\input MultVarDistr
\input AdvMult
\input ConfInts
\input SigTests
\input Est
\input ModelBuilding
\input LinReg
\input AdvRels
\input Markov
\input Queues

\appendix
\input ../../MiscPLN/MatrixReview
\input ../../MiscPLN/R5MinIntro

\end{document}